Articles

Evaluation of the effect of plant material storage on DNA quantity and quality, with a view to implementing a sample storage management policy

Abstract

URFM stores more than 40,000 plant samples either at -20°C or at room temperature after dehydration. The aim of the project presented in this article was to evaluate the quantity and quality of DNA obtained from samples of four Mediterranean tree species. To evaluate DNA quality, we performed genotyping and sequencing analyses commonly used in the laboratory. Our results showed a variation among species in the quantity and the quality of DNA in function of the method and duration of sample conservation. In addition, samples retained over the longest period or with the most basic (dry) method are not those with the poorest DNA quality.

Authors


Matthieu Lingrand

matthieu.lingrand@inrae.fr

Affiliation : INRAE, UR629 Ecologie des Forêts Méditerranéennes (URFM), Domaine Saint Paul, Site Agroparc, FR-84914 Avignon Cedex 9, France

Country : France


Caroline Scotti-Saintagne

https://orcid.org/0000-0001-6891-7315

Affiliation : INRAE, UR629 Ecologie des Forêts Méditerranéennes (URFM), Domaine Saint Paul, Site Agroparc, FR-84914 Avignon Cedex 9, France

Country : France


Sylvie Oddou-Muratorio

https://orcid.org/0000-0003-2374-8313

Affiliation : INRAE, UR629 Ecologie des Forêts Méditerranéennes (URFM), Domaine Saint Paul, Site Agroparc, FR-84914 Avignon Cedex 9, France

Country : France


Marianne Correard

Affiliation : INRAE, UE0348 Unité Expérimentale Entomologie et Forêt Méditerranéenne. INRA-UEFM Domaine Saint Paul, Site Agroparc 84914 Avignon, France

Country : France


Olivier Gilg

https://orcid.org/0000-0002-9083-4492

Affiliation : INRAE, UE0348 Unité Expérimentale Entomologie et Forêt Méditerranéenne. INRA-UEFM Domaine Saint Paul, Site Agroparc 84914 Avignon, France

Country : France


Franck Reï

Affiliation : INRAE, UE0348 Unité Expérimentale Entomologie et Forêt Méditerranéenne. INRA-UEFM Domaine Saint Paul, Site Agroparc 84914 Avignon, France

Country : France


Anne Roig

Affiliation : INRAE, UR629 Ecologie des Forêts Méditerranéennes (URFM), Domaine Saint Paul, Site Agroparc, FR-84914 Avignon Cedex 9, France

Country : France


Patrice Brahic

Affiliation : Office National des Forêts, Pôle National des Ressources Génétiques Forestières, Route du barrage 13115 Saint Paul Lez Durance, France

Country : France

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